Mir-92-P1d

MirGeneDB ID

Ami-Mir-92-P1d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-92b

Paralogues

Ami-Mir-92-P1a Ami-Mir-92-P1c Ami-Mir-92-P2a Ami-Mir-92-P2c

Orthologues

Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

manual_Ami-Mir-92-P3: 58-119 [+] UCSC

Precursor
(pre-Mir +30nt flank)

GGCCGCGGCCAGCGCCUCCGGGGCGGCGGGAGGGCCGGGAUGCGGUGCAGUGUUGUGCGUCUCCUACCAAUAUUGCACUCGUCCCGGCCUCCCGCCGCCCCGGGCUCCUCUACGCCCGCACG

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Structure

        10          20        30        40        50        60 
GGCCGCGGCCAGCGCCU--|               G        C           GUGCGU 
                   CCGGGGCGGCGGGAGG CCGGGAUG GGUGCAGUGUU      C
                   GGCCCCGCCGCCCUCC GGCCCUGC UCACGUUAUAA      U
GCACGCCCGCAUCUCCUCG^               -        -           CCAUCC 
120       110       100        90         80         70

Deep sequencing

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Comment

Not in assembly but in trace archive.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Ami-Mir-92-P1d_5p*

mirBase accession

MIMAT0038103

Sequence

0- AGGGCCGGGAUGCGGUGCAGUGUU -24

Get sequence

Mature sequence

Ami-Mir-92-P1d_3p

mirBase accession

MIMAT0038103

Sequence

40- UAUUGCACUCGUCCCGGCCUCC -62

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