MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-92-P1d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-92b
Paralogues Cpo-Mir-92-P1a  Cpo-Mir-92-P1c  Cpo-Mir-92-P2a  Cpo-Mir-92-P2c  Cpo-Mir-92-P2d 
Orthologues Ami-Mir-92-P1d  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1d  Cel-Mir-92  Cfa-Mir-92-P1d  Cja-Mir-92-P1d  Cmi-Mir-92-P1d  Cpi-Mir-92-P1d  Dno-Mir-92-P1d  Dre-Mir-92-P1d  Eca-Mir-92-P1d  Esc-Mir-92  Ete-Mir-92-P1d  Gja-Mir-92-P1d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1d  Isc-Mir-92  Laf-Mir-92-P1d  Lch-Mir-92-P1d  Loc-Mir-92-P1d  Mal-Mir-92-P1d  Mdo-Mir-92-P1d  Mml-Mir-92-P1d  Mmr-Mir-92-P1d  Mmu-Mir-92-P1d  Mun-Mir-92-P1d  Oan-Mir-92-P1d  Obi-Mir-92  Ocu-Mir-92-P1d  Pab-Mir-92-P1d  Pbv-Mir-92-P1d  Rno-Mir-92-P1d  Sha-Mir-92-P1d  Sme-Mir-92  Spt-Mir-92-P1d  Sto-Mir-92-P1d  Tgu-Mir-92-P1d  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xtr-Mir-92-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(cavPor3)		 scaffold_10: 16106081-16106143 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAGCGGGAUUCCGGGCCCCGGGCGGGCGGGAGGGACGGGACGCGGUGCAGUGUUGUUCUUUCCCCCACCAAUAUUGCACUCGUCCCGGCCUCCGGCCUCCUCGGCCCCCCGGCCUCCCCUUCA
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Structure
        10          20        30        40        50        60  
GAGCGGGAUUCCGGGCC--|    C    G     GA       C           GUUCUUU 
                   CCGGG GGGC GGAGG  CGGGACG GGUGCAGUGUU       \
                   GGCUC UCCG CCUCC  GCCCUGC UCACGUUAUAA       C
ACUUCCCCUCCGGCCCCCC^    C    G     G-       -           CCACCCC 
 120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-92-P1d_5p*
mirBase accessionMIMAT0046931
Sequence 
0- AGGGACGGGACGCGGUGCAGUGUU -24
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Mature sequence

Cpo-Mir-92-P1d_3p
mirBase accessionMIMAT0046932
Sequence 
41- UAUUGCACUCGUCCCGGCCUCC -63
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