Mir-92-P1a

MirGeneDB ID

Cpo-Mir-92-P1a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-92a-1

Paralogues

Cpo-Mir-92-P1c Cpo-Mir-92-P1d Cpo-Mir-92-P2a Cpo-Mir-92-P2c Cpo-Mir-92-P2d

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xtr-Mir-92-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(cavPor3)

scaffold_5: 32028701-32028759 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-92-P1a)

Mir-92-P1a scaffold_5: 32028701-32028759 [-] UCSC
Mir-19-P2a scaffold_5: 32028817-32028877 [-] UCSC
Mir-17-P4a scaffold_5: 32028969-32029027 [-] UCSC
Mir-19-P1a scaffold_5: 32029133-32029190 [-] UCSC
Mir-17-P2a scaffold_5: 32029271-32029335 [-] UCSC
Mir-17-P1a scaffold_5: 32029418-32029477 [-] UCSC

Precursor
(pre-Mir +30nt flank)

AGUGAGGGAAAAUCAAACCCCUUUCUACACAGGUUGGGAUCGGUUGCAAUGCUGUGUUUCUGUAUGGUAUUGCACUUGUCCCGGCCUGUUGAGUUUGGUGGGGAUUGUGACCAGAAGAC

Get precursor sequence

Structure

        10          20        30        40        50         
AGUGAGGGAAAAUCAAA-  -| UUU  AC            C   U        GUGUU 
                  CC CC   CU  ACAGGUUGGGAU GGU GCAAUGCU     U
                  GG GG   GA  UGUCCGGCCCUG UCA CGUUAUGG     C
CAGAAGACCAGUGUUAGG  U^ UUU  GU            U   -        UAUGU 
       110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-92-P1a_5p*

mirBase accession

MIMAT0046928

Sequence

0- AGGUUGGGAUCGGUUGCAAUGCU -23

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Mature sequence

Cpo-Mir-92-P1a_3p

mirBase accession

MIMAT0046929

Sequence

37- UAUUGCACUUGUCCCGGCCUGU -59

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