Mir-92-P1a

MirGeneDB ID

Loc-Mir-92-P1a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-92-P1d Loc-Mir-92-P2c Loc-Mir-92-P2d

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xtr-Mir-92-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG17: 12376738-12376796 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUGCAGUGGUUCAGGGGUCCCUUUCUGUGCAGGUUGGGAUCAGUUGCAGUGCUGUUUAUUUGUAAGGUAUUGCACUUGUCCCGGCCUGUUGAGGACUAAGGGAAUUAAGCCACAAUUUU

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Structure

        10        20           30        40        50         
UUGCAGUGGUUCAGGGGUC    --   GU-|           C   U        GUUUA 
                   CCUU  UCU   GCAGGUUGGGAU AGU GCAGUGCU     U
                   GGAA  AGG   UGUCCGGCCCUG UCA CGUUAUGG     U
UUUUAACACCGAAUUAAG-    UC   AGU^           U   -        AAUGU 
       110        100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-92-P1a_5p*

mirBase accession

None

Sequence

0- AGGUUGGGAUCAGUUGCAGUGCU -23

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Mature sequence

Loc-Mir-92-P1a_3p

mirBase accession

None

Sequence

37- UAUUGCACUUGUCCCGGCCUGU -59

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