MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-92-P1c  Gja-Mir-92-P1d  Gja-Mir-92-P2a  Gja-Mir-92-P2c 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cja-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Eca-Mir-92-P1a  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1a  Isc-Mir-92  Laf-Mir-92-P1a  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmr-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pab-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015159750.1: 119406-119466 [-]
Precursor
(pre-Mir +30nt flank)
AUAAGAGCUAAACUGUACCCCUUUCUAAACAGGUUGGGAUCAGUUGCAAUGCUGUGUGUUUGUCUGUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGCUAGAACGUGGAACAU
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Structure
        10          20        30        40        50        60
AUAAGAGCUAAACUGUA-  -| UU   A             C   U        GUGUGU 
                  CC CC  UCU AACAGGUUGGGAU AGU GCAAUGCU      U
                  GG GG  GGA UUGUCCGGCCCUG UCA CGUUAUGG      U
UACAAGGUGCAAGAUCGG  U^ UU   G             U   -        UGUCUG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Gja-Mir-92-P1a_5p*
mirBase accessionNone
Sequence 
0- AGGUUGGGAUCAGUUGCAAUGCU -23
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Mature sequence

Gja-Mir-92-P1a_3p
mirBase accessionNone
Sequence 
39- UAUUGCACUUGUCCCGGCCUGU -61
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