MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-92a-1
Paralogues Rno-Mir-92-P1c  Rno-Mir-92-P1d  Rno-Mir-92-P2a  Rno-Mir-92-P2c  Rno-Mir-92-P2d 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pbv-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)
chr15: 100180596-100180654 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1a)
Mir-17-P1a chr15: 100179892-100179951 [+] UCSC Ensembl
Mir-17-P2a chr15: 100180031-100180095 [+] UCSC Ensembl
Mir-19-P1a chr15: 100180175-100180232 [+] UCSC Ensembl
Mir-17-P4a chr15: 100180349-100180407 [+] UCSC Ensembl
Mir-19-P2a chr15: 100180479-100180539 [+] UCSC Ensembl
Mir-92-P1a chr15: 100180596-100180654 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUAAGGGAAAAUCAAACCCCUUUCUACACAGGUUGGGAUUUGUCGCAAUGCUGUGUUUCUGUAUAGUAUUGCACUUGUCCCGGCCUGUUGAGUUUGGUGGGGAUUGUGACCAGAAGAU
Get precursor sequence
Structure
        10          20        30        40        50         
CGUAAGGGAAAAUCAAA-  -| UUU  AC            UU  C        GUGUU 
                  CC CC   CU  ACAGGUUGGGAU  GU GCAAUGCU     U
                  GG GG   GA  UGUCCGGCCCUG  CA CGUUAUGA     C
UAGAAGACCAGUGUUAGG  U^ UUU  GU            UU  -        UAUGU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-92-P1a_5p*

mirBase accessionMIMAT0017107
Sequence
0- AGGUUGGGAUUUGUCGCAAUGCU -23
Get sequence
Proposed targets TargetScanVert: rno-miR-92a-1-5p
miRDB: MIMAT0017107
Mature sequence

Rno-Mir-92-P1a_3p

mirBase accessionMIMAT0000816
Sequence
37- UAUUGCACUUGUCCCGGCCUGU -59
Get sequence
Proposed targets microrna.org: MIMAT0000816
TargetScanVert: rno-miR-92a-3p
miRDB: MIMAT0000816