MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-19-P2a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-19b-1
Paralogues Rno-Mir-19-P1a  Rno-Mir-19-P2c 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cja-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Dre-Mir-19-P2a2  Eca-Mir-19-P2a  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Hsa-Mir-19-P2a  Laf-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mal-Mir-19-P2a2  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmr-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Oan-Mir-19-P2a5  Oan-Mir-19-P2a6  Ocu-Mir-19-P2a  Pab-Mir-19-P2a  Pbv-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4  Xtr-Mir-19-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr15: 100180479-100180539 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2a)
Mir-17-P1a chr15: 100179892-100179951 [+] UCSC Ensembl
Mir-17-P2a chr15: 100180031-100180095 [+] UCSC Ensembl
Mir-19-P1a chr15: 100180175-100180232 [+] UCSC Ensembl
Mir-17-P4a chr15: 100180349-100180407 [+] UCSC Ensembl
Mir-19-P2a chr15: 100180479-100180539 [+] UCSC Ensembl
Mir-92-P1a chr15: 100180596-100180654 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGUCCGUACUGAGCACUGGUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUAUAAUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGAAAAGUCUGUAGAGACGUA
Get precursor sequence
Structure
        10        20          30         40         50          
ACUGUCCGUACUGAGCACUGGU--                 -  -|     UC    UGUAUA 
                        CUAUGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                        GGUGUCAGUCAAAACGU CC AAACGU  GUCG      A
AUGCAGAGAUGUCUGAAAAGUGGU                 A  U^     --    UCUUAU 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
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Star sequence

Rno-Mir-19-P2a_5p*

mirBase accessionMIMAT0017096
Sequence
0- AGUUUUGCAGGUUUGCAUCCAGC -23
Get sequence
Proposed targets TargetScanVert: rno-miR-19b-1-5p
miRDB: MIMAT0017096
Mature sequence

Rno-Mir-19-P2a_3p

mirBase accessionMIMAT0000788
Sequence
38- UGUGCAAAUCCAUGCAAAACUGA -61
Get sequence
Proposed targets microrna.org: MIMAT0000788
TargetScanVert: rno-miR-19b-3p
miRDB: MIMAT0000788