MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-19-P2a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-19-P1a  Lch-Mir-19-P2c  Lch-Mir-19-P2d 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cja-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Dre-Mir-19-P2a2  Eca-Mir-19-P2a  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Hsa-Mir-19-P2a  Laf-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mal-Mir-19-P2a2  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmr-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Oan-Mir-19-P2a5  Oan-Mir-19-P2a6  Ocu-Mir-19-P2a  Pab-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4  Xtr-Mir-19-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH129267.1: 172435-172498 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGAGCUUGUCUAGCACUGUUCUCUGGUUAGUUUUGCAGGUUUGCAUCCAGCUUUUCACUAUACACUUGCUGUGCAAAUCCAUGCAAAACUGACUGUAGCAGUGGAAAGAACAACUGUAUGAA
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Structure
        10         20         30         40         50        60 
AGUGAGCUUGUCUAGCA- UG  -  CU             -  -|     UC    UUUUCAC 
                  C  UU CU  GGUUAGUUUUGCA GG UUUGCA  CAGC       U
                  G  GA GA  UCAGUCAAAACGU CC AAACGU  GUCG       A
AAGUAUGUCAACAAGAAA GU  C  UG             A  U^     --    UUCACAU 
  120       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-19-P2a_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUUUUGCAGGUUUGCAUCCAGC -23
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Mature sequence

Lch-Mir-19-P2a_3p (predicted)

mirBase accessionNone
Sequence
41- UGUGCAAAUCCAUGCAAAACUGA -64
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