Mir-19-P2a2

MirGeneDB ID

Tni-Mir-19-P2a2

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-19-P1a1 Tni-Mir-19-P1a2 Tni-Mir-19-P2a1 Tni-Mir-19-P2d

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Xtr-Mir-19-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

2: 12892619-12892679 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2a2)

Mir-17-P1a2 2: 12891981-12892039 [+] UCSC Ensembl
Mir-17-P4a2 2: 12892494-12892553 [+] UCSC Ensembl
Mir-92-P1a2 2: 12892725-12892783 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGUAGCACAUGGUCAUGGGUCCCUGGUUAGUUUUGCUGGUUUGCUUUCAGCUUUUCUCUAUACUGCUGUGCAAAUCCAUGCAAAACUGAUCAUGGAGCUAAACAGAAUCCACCCAAAGU

Get precursor sequence

Structure

        10          20        30         40         50          
GAAGUAGCACAUGGUCA--   G   C             -   -|    UUU    UUUUCU 
                   UGG UCC UGGUUAGUUUUGC UGG UUUGC   CAGC      \
                   AUC AGG ACUAGUCAAAACG ACC AAACG   GUCG      C
UGAAACCCACCUAAGACAA   G   U             U   U^    U--    UCAUAU 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-19-P2a2_5p*

mirBase accession

None

Sequence

0- AGUUUUGCUGGUUUGCUUUCAGC -23

Get sequence

Mature sequence

Tni-Mir-19-P2a2_3p

mirBase accession

None

Sequence

38- UGUGCAAAUCCAUGCAAAACUGA -61

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