Mir-19-P2a2

MirGeneDB ID

Gmo-Mir-19-P2a2

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-19b-1

Paralogues

Gmo-Mir-19-P1a1 Gmo-Mir-19-P1a2 Gmo-Mir-19-P2a1 Gmo-Mir-19-P2c Gmo-Mir-19-P2d

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a2 Xtr-Mir-19-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_918: 373455-373516 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2a2)

Mir-17-P1a2 GeneScaffold_918: 372883-372941 [+] UCSC Ensembl
Mir-17-P2a2 GeneScaffold_918: 373010-373074 [+] UCSC Ensembl
Mir-19-P1a2 GeneScaffold_918: 373145-373201 [+] UCSC Ensembl
Mir-17-P4a2 GeneScaffold_918: 373326-373385 [+] UCSC Ensembl
Mir-19-P2a2 GeneScaffold_918: 373455-373516 [+] UCSC Ensembl
Mir-92-P1a2 GeneScaffold_918: 373563-373620 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUGCGCUCUGUGGACAAGGGUCUCUGGUUAGUUUUGCUGGUUUGCUUUCAGCUUUUGAAAACACACGCUGUGCAAAUCCAUGCAAAACUGAUCAUGGCACUGAUAAAAGUCUGGUCGAAGC

Get precursor sequence

Structure

        10         20         30         40         50        60
ACUGCGCUCUGUGGACAAG-   -  C             -   -|    UUU    UUUUGA 
                    GGU CU UGGUUAGUUUUGC UGG UUUGC   CAGC      A
                    UCA GG ACUAGUCAAAACG ACC AAACG   GUCG      A
CGAAGCUGGUCUGAAAAUAG   C  U             U   U^    U--    CACACA 
120       110       100        90        80          70