MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-19-P2a2

Family name MIR-19 (all species)
Seed GUGCAAA
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Dre-Mir-19-P2a1  Dre-Mir-19-P2c  Dre-Mir-19-P2d 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a2  Hsa-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a2  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Ocu-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a2  Xtr-Mir-19-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr9: 53436416-53436475 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2a2)
Mir-92-P1a2 chr9: 53436299-53436355 [-] UCSC Ensembl
Mir-17-P2a2 chr9: 53436841-53436905 [-] UCSC Ensembl
Mir-17-P1a2 chr9: 53436955-53437013 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUCGUGCUUUGUGCACACUGUCCUGGUUAGUUUUGCUGGUUUGCUGUCAGCGUUCGUAUCGUUGCUGUGCAAAUCCAUGCAAAACUGAUCAUAGCAGUGAGGAUUCUCCAAGCGGCGU
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Structure
        10          20        30         40         50         
UAUUCGUGCUUUGUGCA--      CC             -   -|    UGU    GUUCG 
                   CACUGU  UGGUUAGUUUUGC UGG UUUGC   CAGC     U
                   GUGACG  ACUAGUCAAAACG ACC AAACG   GUCG     A
UGCGGCGAACCUCUUAGGA      AU             U   U^    U--    UUGCU 
.       110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-19-P2a2_5p*

mirBase accessionNone
Sequence
0- AGUUUUGCUGGUUUGCUGUCAGC -23
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Mature sequence

Dre-Mir-19-P2a2_3p

mirBase accessionNone
Sequence
37- UGUGCAAAUCCAUGCAAAACUGA -60
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