MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-19-P2a

Family name MIR-19 (all species)
Seed GUGCAAA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-19b
Paralogues Ami-Mir-19-P1a  Ami-Mir-19-P2c 
Orthologues Aca-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Dre-Mir-19-P2a2  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Hsa-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mal-Mir-19-P2a2  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Oan-Mir-19-P2a5  Oan-Mir-19-P2a6  Ocu-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4  Xtr-Mir-19-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017709609.1: 10810116-10810176 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-19-P2a)
Mir-92-P1a NW_017709609.1: 10810006-10810064 [-] UCSC
Mir-19-P2a NW_017709609.1: 10810116-10810176 [-] UCSC
Mir-17-P4a NW_017709609.1: 10810252-10810310 [-] UCSC
Mir-19-P1a NW_017709609.1: 10810475-10810532 [-] UCSC
Mir-17-P2a NW_017709609.1: 10810607-10810671 [-] UCSC
Mir-17-P1a NW_017709609.1: 10810755-10810815 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUUUUUAAAUUUAAACACUGUUCUCUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUAUGAUACUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGCAGUGACAAGUCAGUGACUAAGAA
Get precursor sequence
Structure
        10            20        30         40         50          
CUUUUUAAAUUUAAACA----|    CUC              -  -      UC    UGUAUG 
                     CUGUU   UGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                     GACGG   GUCAGUCAAAACGU CC AAACGU  GUCG      A
AAGAAUCAGUGACUGAACAGU^    U--              A  U      --    UCUCAU 
 .       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Star sequence

Ami-Mir-19-P2a_5p*

mirBase accessionMIMAT0038052
Sequence
0- AGUUUUGCAGGUUUGCAUCCAGC -23
Get sequence
Mature sequence

Ami-Mir-19-P2a_3p

mirBase accessionMIMAT0038053
Sequence
38- UGUGCAAAUCCAUGCAAAACUGA -61
Get sequence