MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-19-P2a1

Family name MIR-19 (all species)
Seed GUGCAAA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-19b
Paralogues Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Tni-Mir-19-P2a2  Tni-Mir-19-P2d 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Hsa-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Ocu-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Xtr-Mir-19-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
5: 8188261-8188319 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2a1)
Mir-92-P1a1 5: 8188110-8188167 [-] UCSC Ensembl
Mir-19-P2a1 5: 8188261-8188319 [-] UCSC Ensembl
Mir-19-P1a1 5: 8188599-8188656 [-] UCSC Ensembl
Mir-17-P2a1 5: 8188734-8188798 [-] UCSC Ensembl
Mir-17-P1a1 5: 8188866-8188926 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGACUCUUUGUUCAAUCAUCGUUUGGUCAGUUUUGCUGGUUUGCAUUCAGCUUUGUUGCUGUGCUGUGCAAAUCCAUGCAAAACUGACUAAGAUGAUGACCUUUUCACUAUCAAAGC
Get precursor sequence
Structure
        10         20         30         40         50         
UCAGACUCUUUGUUCAA-        -             -   -|     UU    UUUGU 
                  UCAUCGUU UGGUCAGUUUUGC UGG UUUGCA  CAGC     \
                  AGUAGUAG AUCAGUCAAAACG ACC AAACGU  GUCG     U
CGAAACUAUCACUUUUCC        A             U   U^     --    UGUCG 
       110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-19-P2a1_5p*

mirBase accessionNone
Sequence
0- AGUUUUGCUGGUUUGCAUUCAGC -23
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Mature sequence

Tni-Mir-19-P2a1_3p

mirBase accessionMIMAT0002923
Sequence
36- UGUGCAAAUCCAUGCAAAACUGA -59
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