Mir-19-P2a

MirGeneDB ID

Gja-Mir-19-P2a

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-19-P1a Gja-Mir-19-P2c

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015159750.1: 119520-119580 [-]

Precursor
(pre-Mir +30nt flank)

UUUUUGUUAUUUGAACACUGUGCUCUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUAUAAUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGCAGUGACAAGUCAAUGAAUAAGAG

Get precursor sequence

Structure

        10        20          30         40         50          
UUUUUGUUAUUUGAACACUG--    CU             -  -|     UC    UGUAUA 
                      UGCU  GGUUAGUUUUGCA GG UUUGCA  CAGC      \
                      ACGG  UCAGUCAAAACGU CC AAACGU  GUCG      A
GAGAAUAAGUAACUGAACAGUG    UG             A  U^     --    UCUUAU 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

To

Star sequence

Gja-Mir-19-P2a_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAGGUUUGCAUCCAGC -23

Get sequence

Mature sequence

Gja-Mir-19-P2a_3p

mirBase accession

None

Sequence

38- UGUGCAAAUCCAUGCAAAACUGA -61

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