MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-19-P2a5

Family name MIR-19 (all species)
Seed GUGCAAA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-19b-2
Paralogues Oan-Mir-19-P1a  Oan-Mir-19-P2a6  Oan-Mir-19-P2c 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Hsa-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Ocu-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Xtr-Mir-19-P2a 
Node of Origin (locus) O. anatinus
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041737.1: 22689406-22689466 [-]
Clustered miRNAs
(< 50kb from Mir-19-P2a5)
Mir-92-P1a7 NC_041737.1: 22689293-22689351 [-]
Mir-19-P2a5 NC_041737.1: 22689406-22689466 [-]
Mir-17-P4a7 NC_041737.1: 22689543-22689601 [-]
Mir-19-P1a NC_041737.1: 22689716-22689773 [-]
Mir-17-P1a NC_041737.1: 22690068-22690128 [-]
Precursor
(pre-Mir +30nt flank)
GGUCUUUUAAUUGAGCGCUGUUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUAUGGUACUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGCAGUGAAGUCCGUUCCAAAGCCAG
Get precursor sequence
Structure
        10            20        30         40         50          
GGUCUUUUAAUUGAGCG----|  UU                 -  -      UC    UGUAUG 
                     CUG  CUAUGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                     GAC  GGUGUCAGUCAAAACGU CC AAACGU  GUCG      G
GACCGAAACCUUGCCUGAAGU^  --                 A  U      --    UCUCAU 
 .       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-19-P2a5_5p*

mirBase accessionMIMAT0031104
Sequence
0- AGUUUUGCAGGUUUGCAUCCAGC -23
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Mature sequence

Oan-Mir-19-P2a5_3p

mirBase accessionMIMAT0006856
Sequence
38- UGUGCAAAUCCAUGCAAAACUGA -61
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