MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-19b-1
Paralogues Oan-Mir-19-P1a  Oan-Mir-19-P2a5  Oan-Mir-19-P2a6 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cja-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Eca-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Laf-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmr-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Neu-Mir-19-P2c  Ocu-Mir-19-P2c  Pab-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041733.1: 24649885-24649944 [-]
Clustered miRNAs
(< 50kb from Mir-19-P2c)
Mir-92-P2c NC_041733.1: 24649599-24649663 [-]
Mir-92-P1c NC_041733.1: 24649741-24649802 [-]
Mir-19-P2c NC_041733.1: 24649885-24649944 [-]
Mir-17-P4c NC_041733.1: 24650009-24650072 [-]
Mir-17-P2c NC_041733.1: 24650219-24650283 [-]
Mir-17-P1c NC_041733.1: 24650384-24650441 [-]
Precursor
(pre-Mir +30nt flank)
GGAAUUGGAAAGACAGUACUGCUUACAGUCAGUUUUGCAGGUUUGCAUCCCAGCGUAUACAAAUUGCUGUGCAAAUCCAUGCAAAACUGAUUGUGAUGGUGUUUGCUAUCUUGCUAAGUA
Get precursor sequence
Structure
        10           20        30         40         50          
GGAAUUGGAAAGACAGU---    C                 -  -|     UCC    GUAUA 
                    ACUG UUACAGUCAGUUUUGCA GG UUUGCA   CAGC     \
                    UGGU AGUGUUAGUCAAAACGU CC AAACGU   GUCG     C
AUGAAUCGUUCUAUCGUUUG    -                 A  U^     ---    UUAAA 
.       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-19-P2c_5p*

mirBase accessionMIMAT0006855
Sequence
0- AGUUUUGCAGGUUUGCAUCCCAGC -24
Get sequence
Mature sequence

Oan-Mir-19-P2c_3p

mirBase accessionMIMAT0006856
Sequence
37- UGUGCAAAUCCAUGCAAAACUGA -60
Get sequence