MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-18
Paralogues Oan-Mir-17-P1a  Oan-Mir-17-P1c  Oan-Mir-17-P2a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Oan-Mir-17-P4c 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Ocu-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041733.1: 24650219-24650283 [-]
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-92-P2c NC_041733.1: 24649599-24649663 [-]
Mir-92-P1c NC_041733.1: 24649741-24649802 [-]
Mir-19-P2c NC_041733.1: 24649885-24649944 [-]
Mir-17-P4c NC_041733.1: 24650009-24650072 [-]
Mir-17-P2c NC_041733.1: 24650219-24650283 [-]
Mir-17-P1c NC_041733.1: 24650384-24650441 [-]
Precursor
(pre-Mir +30nt flank)
CUGCUAUCCAUUUCAGAAUGUCCCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGUAGCUUAGAAUCUACUGCCCUAAAUGCUCCUUCUGGCACAAGCUGCCUAAUAUACAACUUCGAAAUC
Get precursor sequence
Structure
        10          20        30          40        50        60 
CUGCUAUCCAUUUCAGAAU--  CC         --|  U    C   U     U  UGAAGUA 
                     GU  CUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                     CG  GAACACGGU  UCC CGUA AUC CGUCA UC       C
CUAAAGCUUCAACAUAUAAUC  UC         CU^  U    A   C     -  UAAGAUU 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-17-P2c_5p

mirBase accessionMIMAT0006851
Sequence
0- UAAGGUGCAUCUAGUGCAGUUAG -23
Get sequence
Star sequence

Oan-Mir-17-P2c_3p*

mirBase accessionMIMAT0006852
Sequence
40- UACUGCCCUAAAUGCUCCUUCUGGC -65
Get sequence