Mir-17-P2c

MirGeneDB ID

Mdo-Mir-17-P2c

Family name

MIR-17 (all species)

Seed

AAGGUGC

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-18b

Paralogues

Mdo-Mir-17-P1a Mdo-Mir-17-P1c Mdo-Mir-17-P2a Mdo-Mir-17-P4a Mdo-Mir-17-P4c Mdo-Mir-17-P4d

Orthologues

Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(monDom5_add)

X: 35202855-35202919 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2c)

Mir-92-P2c X: 35202093-35202159 [-] UCSC Ensembl
Mir-92-P1c X: 35202231-35202295 [-] UCSC Ensembl
Mir-19-P2c X: 35202389-35202447 [-] UCSC Ensembl
Mir-17-P4c X: 35202543-35202603 [-] UCSC Ensembl
Mir-17-P2c X: 35202855-35202919 [-] UCSC Ensembl
Mir-17-P1c X: 35203052-35203108 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGCGUUGAGCUACCAACUGUCCCUUGUGCUAAGGUGCAUCUAGUGCAGUUAGUGAUGUAGUUUAGUAUCUACUGCCCUAAAUGCUCCUUCCGGCACAAGCCGCCUCCUAGACGACCUGGCAGCA

Get precursor sequence

Structure

        10          20        30          40        50        60 
CCGCGUUGAGCUACCAACU--  CC        --|   U    C   U     U  UGAUGUA 
                     GU  CUUGUGCU  AAGG GCAU UAG GCAGU AG       G
                     CG  GAACACGG  UUCC CGUA AUC CGUCA UC       U
ACGACGGUCCAGCAGAUCCUC  CC        CC^   U    A   C     -  UAUGAUU 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-17-P2c_5p

mirBase accession

MIMAT0028766

Sequence

0- UAAGGUGCAUCUAGUGCAGUUAG -23

Get sequence

Proposed targets

TargetScanVert: mdo-miR-18b-5p

Star sequence

Mdo-Mir-17-P2c_3p*

mirBase accession

MIMAT0028767

Sequence

40- UACUGCCCUAAAUGCUCCUUCCGGC -65

Get sequence

Proposed targets

TargetScanVert: mdo-miR-18b-3p