MirGeneDB 3.0

MirGeneDB ID

Mdo-Mir-17-P4a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-20a
Paralogues Mdo-Mir-17-P1a  Mdo-Mir-17-P1c  Mdo-Mir-17-P2a  Mdo-Mir-17-P2c  Mdo-Mir-17-P4c  Mdo-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
7: 108468450-108468508 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a)
Mir-92-P1a 7: 108468200-108468258 [-] UCSC Ensembl
Mir-19-P2a 7: 108468317-108468377 [-] UCSC Ensembl
Mir-17-P4a 7: 108468450-108468508 [-] UCSC Ensembl
Mir-19-P1a 7: 108468619-108468676 [-] UCSC Ensembl
Mir-17-P2a 7: 108468761-108468825 [-] UCSC Ensembl
Mir-17-P1a 7: 108468905-108468965 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUAUUUGAAAGGACAGCUUUUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUGAAGUACUGCUAGCUGUAGAACUACAACUUCAUCG
Get precursor sequence
Structure
        10            20        30         40        50         
GUGUAUUUGAAAGGACA----|  UUU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     A
GCUACUUCAACAUCAAGAUGU^  U--    A   AG                 -   UAUUG 
       110       100          90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-17-P4a_5p

mirBase accessionMIMAT0004169
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Proposed targets TargetScanVert: mdo-miR-20a-5p
Star sequence

Mdo-Mir-17-P4a_3p*

mirBase accessionMIMAT0026707
Sequence
36- ACUGCAUUAUGAGCACUUGAAGU -59
Get sequence
Proposed targets TargetScanVert: mdo-miR-20a-3p