MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-17-P4a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-20a
Paralogues Ocu-Mir-17-P1a  Ocu-Mir-17-P1c  Ocu-Mir-17-P1d  Ocu-Mir-17-P2a  Ocu-Mir-17-P2c  Ocu-Mir-17-P4c  Ocu-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)
chr8: 93068174-93068232 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a)
Mir-17-P1a chr8: 93067701-93067760 [+] UCSC Ensembl
Mir-17-P2a chr8: 93067839-93067903 [+] UCSC Ensembl
Mir-19-P1a chr8: 93067987-93068044 [+] UCSC Ensembl
Mir-17-P4a chr8: 93068174-93068232 [+] UCSC Ensembl
Mir-19-P2a chr8: 93068307-93068367 [+] UCSC Ensembl
Mir-92-P1a chr8: 93068424-93068482 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUGUACGAUGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUAAAGUACUGCUAGCUGUAGAACUCCAACUUCGGCU
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Structure
        10            20        30         40        50         
GUGUGUACGAUGUGACA----|  UCU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     A
UCGGCUUCAACCUCAAGAUGU^  U--    A   AA                 -   UAUUG 
       110       100          90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-17-P4a_5p

mirBase accessionMIMAT0048120
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Ocu-Mir-17-P4a_3p*

mirBase accessionMIMAT0048121
Sequence
36- ACUGCAUUAUGAGCACUUAAAGU -59
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