MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-17-P4a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-17-P1a  Gja-Mir-17-P1c  Gja-Mir-17-P2a  Gja-Mir-17-P2c  Gja-Mir-17-P4c 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015159750.1: 119664-119722 [-]
Precursor
(pre-Mir +30nt flank)
AAGUUACAGGCAAAACAGCUCUUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGAGUAAUAAUCUACUGCAUUAGGAGCACUUAAAGUACUACCAGCUGUAGAACUUCAGUUUCACCA
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Structure
        10            20        30         40        50         
AAGUUACAGGCAAAACA----|  CUU    C   A-        A        G   UGAGU 
                     GCU   GUAG ACU  AAGUGCUU UAGUGCAG UAG     \
                     CGA   CAUC UGA  UUCACGAG AUUACGUC AUC     A
ACCACUUUGACUUCAAGAUGU^  C--    A   AA        G        -   UAAUA 
       110       100          90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Gja-Mir-17-P4a_5p

mirBase accessionNone
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Gja-Mir-17-P4a_3p*

mirBase accessionNone
Sequence
36- ACUGCAUUAGGAGCACUUAAAGU -59
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