MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-17-P4a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-20a
Paralogues Xtr-Mir-17-P1a  Xtr-Mir-17-P1c  Xtr-Mir-17-P2a  Xtr-Mir-17-P2c  Xtr-Mir-17-P4c  Xtr-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr2: 120019995-120020054 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a)
Mir-92-P1a chr2: 120019748-120019807 [-] UCSC Ensembl
Mir-19-P2a chr2: 120019867-120019928 [-] UCSC Ensembl
Mir-17-P4a chr2: 120019995-120020054 [-] UCSC Ensembl
Mir-19-P1a chr2: 120020122-120020179 [-] UCSC Ensembl
Mir-17-P2a chr2: 120020263-120020327 [-] UCSC Ensembl
Mir-17-P1a chr2: 120020393-120020454 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACACUGUACCAUUUUGGCUAAAGUGGUGCUAAAGUGCUUAUAGUGCAGGUAGUUUUUCUGUAUUCUACUGCAUAAUGAGCACUUAAAGUACUCCUAGCUGCAUGCCGACCCAAUCAGUC
Get precursor sequence
Structure
        10            20        30         40        50         
CACACUGUACCAUUUUG----|  AA  UG     A-          A      G   UUUUU 
                     GCU  AG  GUGCU  AAGUGCUUAU GUGCAG UAG     C
                     CGA  UC  CAUGA  UUCACGAGUA UACGUC AUC     U
CUGACUAACCCAGCCGUACGU^  --  CU     AA          A      -   UUAUG 
.       110       100          90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-17-P4a_5p

mirBase accessionMIMAT0003669
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
Proposed targets TargetScanVert: xtr-miR-20a-5p
Star sequence

Xtr-Mir-17-P4a_3p*

mirBase accessionMIMAT0003670
Sequence
37- ACUGCAUAAUGAGCACUUAAAGU -60
Get sequence
Proposed targets TargetScanVert: xtr-miR-20a-3p