MirGeneDB ID | Cja-Mir-17-P4a |
---|---|
Family name | MIR-17 (all species) |
Seed | AAAGUGC |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-17-P1a Cja-Mir-17-P1c Cja-Mir-17-P1d Cja-Mir-17-P2a Cja-Mir-17-P2c Cja-Mir-17-P4c Cja-Mir-17-P4d |
Orthologues | Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 6487305-6487363 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GUAUUUCUGAUGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUAAAGUACUGCUAGCUGUAGAACUCCAGCUUCGACCGet precursor sequence |
Structure | 10 20 30 40 50 GUAUUUCUGAUGUGACA----| UCU C A- G UGUUU GCU GUAG ACU AAGUGCUUAUAGUGCAG UAG \ CGA CGUC UGA UUCACGAGUAUUACGUC AUC A CCAGCUUCGACCUCAAGAUGU^ U-- A AA - UAUUG 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17), UGUG in loop |
Mature sequence | Cja-Mir-17-P4a_5p |
mirBase accession | None |
Sequence |
0- UAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
|
Star sequence | Cja-Mir-17-P4a_3p* |
mirBase accession | None |
Sequence |
36- ACUGCAUUAUGAGCACUUAAAGU -59
Get sequence
|