MirGeneDB ID | Laf-Mir-17-P4a |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-17-P1a
Laf-Mir-17-P1c
Laf-Mir-17-P1d
Laf-Mir-17-P2a
Laf-Mir-17-P2c
Laf-Mir-17-P4c
Laf-Mir-17-P4d
|
Orthologues |
Aca-Mir-17-P4a
Ami-Mir-17-P4a
Bta-Mir-17-P4a
Cfa-Mir-17-P4a
Cja-Mir-17-P4a
Cli-Mir-17-P4a
Cmi-Mir-17-P4a
Cpi-Mir-17-P4a
Cpo-Mir-17-P4a
Dno-Mir-17-P4a
Dre-Mir-17-P4a1
Dre-Mir-17-P4a2
Eca-Mir-17-P4a
Ete-Mir-17-P4a
Gga-Mir-17-P4a
Gja-Mir-17-P4a
Gmo-Mir-17-P4a1
Gmo-Mir-17-P4a2
Hsa-Mir-17-P4a
Lch-Mir-17-P4a
Loc-Mir-17-P4a
Mal-Mir-17-P4a1
Mal-Mir-17-P4a2
Mdo-Mir-17-P4a
Mml-Mir-17-P4a
Mmr-Mir-17-P4a
Mmu-Mir-17-P4a
Mun-Mir-17-P4a
Neu-Mir-17-P4a
Oan-Mir-17-P4a7
Oan-Mir-17-P4a8
Ocu-Mir-17-P4a
Pab-Mir-17-P4a
Pbv-Mir-17-P4a
Rno-Mir-17-P4a
Sha-Mir-17-P4a
Spt-Mir-17-P4a
Sto-Mir-17-P4a
Tgu-Mir-17-P4a
Tni-Mir-17-P4a1
Tni-Mir-17-P4a2
Xla-Mir-17-P4a3
Xla-Mir-17-P4a4
Xtr-Mir-17-P4a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010038.1: 14396708-14396766 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGUGUCUGAUGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUCAUGAGCACUUAAAGUACUGCCAGCUGUAGAACUCCAGCUUCAGCC
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGUGUCUGAUGUGACA----| UCU C A- A G UGUUU
GCU GUAG ACU AAGUGCUUAU GUGCAG UAG \
CGA CGUC UGA UUCACGAGUA UACGUC AUC A
CCGACUUCGACCUCAAGAUGU^ C-- A AA C - UAUUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Laf-Mir-17-P4a_5p |
mirBase accession | None |
Sequence |
0- UAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
|
Star sequence |
Laf-Mir-17-P4a_3p* |
mirBase accession | None |
Sequence |
36- ACUGCAUCAUGAGCACUUAAAGU -59
Get sequence
|