| MirGeneDB ID | Laf-Mir-17-P2a |
|---|---|
| Family name | MIR-17 (all species) |
| Seed | AAGGUGC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-17-P1a Laf-Mir-17-P1c Laf-Mir-17-P1d Laf-Mir-17-P2c Laf-Mir-17-P4a Laf-Mir-17-P4c Laf-Mir-17-P4d |
| Orthologues | Aca-Mir-17-P2a Ami-Mir-17-P2a Bta-Mir-17-P2a Cfa-Mir-17-P2a Cja-Mir-17-P2a Cli-Mir-17-P2a Cmi-Mir-17-P2a Cpi-Mir-17-P2a Cpo-Mir-17-P2a Dno-Mir-17-P2a Dre-Mir-17-P2a1 Dre-Mir-17-P2a2 Eca-Mir-17-P2a Ete-Mir-17-P2a Gga-Mir-17-P2a Gja-Mir-17-P2a Gmo-Mir-17-P2a1 Gmo-Mir-17-P2a2 Hsa-Mir-17-P2a Lch-Mir-17-P2a Loc-Mir-17-P2a Mal-Mir-17-P2a2a Mal-Mir-17-P2a2b Mdo-Mir-17-P2a Mml-Mir-17-P2a Mmr-Mir-17-P2a Mmu-Mir-17-P2a Mun-Mir-17-P2a Neu-Mir-17-P2a Oan-Mir-17-P2a Ocu-Mir-17-P2a Pab-Mir-17-P2a Pbv-Mir-17-P2a Rno-Mir-17-P2a Sha-Mir-17-P2a Spt-Mir-17-P2a Sto-Mir-17-P2a Tgu-Mir-17-P2a Tni-Mir-17-P2a1 Tni-Mir-17-P2a2 Xla-Mir-17-P2a3 Xla-Mir-17-P2a4 Xtr-Mir-17-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010038.1: 14397018-14397082 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGGCCUGCUGGUGUCGAGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUUUUCAUCCAAUAAUUCGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGGCCUGCUGGUGUCGAGU-- U --| U UC U A UGAAGUA GCUUUUUGU CUA AGG GCA UAG GCAG UAG G UGAAGAAUA GGU UCC CGU AUC CGUC AUC A CUUAAUAACCUACUUUUGUAU C CU^ U GA C - UACGAUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Laf-Mir-17-P2a_5p |
| mirBase accession | None |
| Sequence |
0- UAAGGUGCAUCUAGUGCAGAUAG -23
Get sequence
|
| Co-mature sequence | Laf-Mir-17-P2a_3p |
| mirBase accession | None |
| Sequence |
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
Get sequence
|
