MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-17-P2a

Family name MIR-17 (all species)
Seed AAGGUGC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-18a
Paralogues Xtr-Mir-17-P1a  Xtr-Mir-17-P1c  Xtr-Mir-17-P2c  Xtr-Mir-17-P4a  Xtr-Mir-17-P4c  Xtr-Mir-17-P4d 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr2: 120020263-120020327 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2a)
Mir-92-P1a chr2: 120019748-120019807 [-] UCSC Ensembl
Mir-19-P2a chr2: 120019867-120019928 [-] UCSC Ensembl
Mir-17-P4a chr2: 120019995-120020054 [-] UCSC Ensembl
Mir-19-P1a chr2: 120020122-120020179 [-] UCSC Ensembl
Mir-17-P2a chr2: 120020263-120020327 [-] UCSC Ensembl
Mir-17-P1a chr2: 120020393-120020454 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUGUGUGUCCAUAUUGUGCUUUUUGUCCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAAAAGUACUCUUUCGCUGAAACUUGUU
Get precursor sequence
Structure
        10          20         30         40        50        60 
GUGUGUGUGUCCAUAUU--           -  U-|   U   UC   U    A   UGAAGUA 
                   GUGCUUUUUGU CC  AAGG GCA  UAG GCAG UAG       G
                   CAUGAAAAAUA GG  UUCC CGU  AUC CGUC AUC       A
UUGUUCAAAGUCGCUUUCU           C  UC^   U   GA   C    -   UACGAUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-17-P2a_5p

mirBase accessionMIMAT0003652
Sequence
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Proposed targets TargetScanVert: xtr-miR-18a-5p
Star sequence

Xtr-Mir-17-P2a_3p*

mirBase accessionMIMAT0005462
Sequence
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
Get sequence
Proposed targets TargetScanVert: xtr-miR-18a-3p