MirGeneDB 3.0

MirGeneDB ID

Pbv-Mir-17-P2a

Family name MIR-17 (all species)
Seed AAGGUGC
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-18a
Paralogues Pbv-Mir-17-P1a  Pbv-Mir-17-P1c  Pbv-Mir-17-P2c  Pbv-Mir-17-P4a  Pbv-Mir-17-P4c 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cja-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Eca-Mir-17-P2a  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Laf-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmr-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Neu-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pab-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xtr-Mir-17-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE958468.1: 78002-78066 [-]
Clustered miRNAs
(< 50kb from Mir-17-P2a)
Mir-92-P1a KE958468.1: 77465-77524 [-]
Mir-19-P2a KE958468.1: 77578-77638 [-]
Mir-17-P4a KE958468.1: 77721-77779 [-]
Mir-19-P1a KE958468.1: 77871-77928 [-]
Mir-17-P2a KE958468.1: 78002-78066 [-]
Mir-17-P1a KE958468.1: 78143-78203 [-]
Precursor
(pre-Mir +30nt flank)
UGGCUGCCGUGCAAUAACUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUGUCUUUUCUCACAGUCACUU
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Structure
        10          20        30          40        50        60 
UGGCUGCCGUGCAAUAA-- U         U   --|  U   UC   U    A   UGAAGUA 
                   C GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                   G UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
UUCACUGACACUCUUUUCU U         C   CU^  U   GA   C    -   UACGAUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Pbv-Mir-17-P2a_5p

mirBase accessionMIMAT0038840
Sequence
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Star sequence

Pbv-Mir-17-P2a_3p*

mirBase accessionMIMAT0038841
Sequence
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
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