MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-17-P2a

Family name MIR-17 (all species)
Seed AAGGUGC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-17-P1a  Gja-Mir-17-P1c  Gja-Mir-17-P2c  Gja-Mir-17-P4a  Gja-Mir-17-P4c 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cja-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Eca-Mir-17-P2a  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Laf-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmr-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Neu-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pab-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xtr-Mir-17-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015159750.1: 119955-120019 [-]
Precursor
(pre-Mir +30nt flank)
CGUAGUGUGGUGUUUUAAUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGACUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUGUAUUUUCAUCCAGUCACUC
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Structure
        10          20        30          40        50        60 
CGUAGUGUGGUGUUUUAAU--         U   --|  U   UC   U    A   UGAAGUA 
                     GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                     UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
CUCACUGACCUACUUUUAUGU         C   CU^  U   GA   C    -   UACGAUC 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-17-P2a_5p
mirBase accessionNone
Sequence 
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Star sequence

Gja-Mir-17-P2a_3p*
mirBase accessionNone
Sequence 
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
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