MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-17-P2a

Family name MIR-17 (all species)
Seed AAGGUGC
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-18a
Paralogues Gga-Mir-17-P1a  Gga-Mir-17-P1c  Gga-Mir-17-P2c  Gga-Mir-17-P4a  Gga-Mir-17-P4c 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cja-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Eca-Mir-17-P2a  Ete-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Laf-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmr-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Neu-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pab-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xtr-Mir-17-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
1: 149440419-149440483 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2a)
Mir-92-P1a 1: 149439857-149439915 [-] UCSC Ensembl
Mir-19-P2a 1: 149439972-149440032 [-] UCSC Ensembl
Mir-17-P4a 1: 149440105-149440163 [-] UCSC Ensembl
Mir-19-P1a 1: 149440280-149440337 [-] UCSC Ensembl
Mir-17-P2a 1: 149440419-149440483 [-] UCSC Ensembl
Mir-17-P1a 1: 149440570-149440630 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUGUGGUGGUGUCAAGUGCUUUUUGUACUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUCUUCAUCCAGUCACUC
Get precursor sequence
Structure
        10          20        30          40        50        60 
CUGUGUGGUGGUGUCAAGU--         A   --|  U   UC   U    A   UGAAGUA 
                     GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                     UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
CUCACUGACCUACUUCUGUAU         C   CU^  U   GA   C    -   UACGAUU 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-17-P2a_5p

mirBase accessionMIMAT0001113
Sequence
0- UAAGGUGCAUCUAGUGCAGAUAG -23
Get sequence
Proposed targets TargetScanVert: gga-miR-18a-5p
miRDB: MIMAT0001113
Star sequence

Gga-Mir-17-P2a_3p*

mirBase accessionMIMAT0026499
Sequence
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
Get sequence
Proposed targets TargetScanVert: gga-miR-18a-3p
miRDB: MIMAT0026499