MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-17-P2a

Family name MIR-17 (all species)
Seed AAGGUGC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-17-P1a  Cja-Mir-17-P1c  Cja-Mir-17-P1d  Cja-Mir-17-P2c  Cja-Mir-17-P4a  Cja-Mir-17-P4c  Cja-Mir-17-P4d 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Eca-Mir-17-P2a  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Laf-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmr-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Neu-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pab-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xtr-Mir-17-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021915.1: 6486986-6487048 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCCUGCUGAUGUUGAGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUAUUCAUCCACUAAC
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Structure
        10        20        30          40        50        60 
GGGCCUGCUGAUGUUGAGU         U   --|  U   UC   U    A   UGAAGUA 
                   GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                   UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
CAAUCACCUACUUAUGUAU         C   CU^  U   GA   C    -   UACGAUU 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Cja-Mir-17-P2a_5p
mirBase accessionNone
Sequence 
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Star sequence

Cja-Mir-17-P2a_3p*
mirBase accessionNone
Sequence 
41- ACUGCCCUAAGUGCUCCUUCUG -63
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