| MirGeneDB ID | Cja-Mir-17-P4c |
|---|---|
| Family name | MIR-17 (all species) |
| Seed | AAAGUGC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-17-P1a Cja-Mir-17-P1c Cja-Mir-17-P1d Cja-Mir-17-P2a Cja-Mir-17-P2c Cja-Mir-17-P4a Cja-Mir-17-P4d |
| Orthologues | Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 125646777-125646837 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | ACAGUGGAUAAGAUUGGGUCCUAGUAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUGACUCUACUGUAGUGUGGGCACUUCUAGUACUCUUGGAUAACAAAUCUCUUGUUGGCGGGet precursor sequence |
| Structure | 10 20 30 40 50 ACAGUGGAUAAGAUUGG---| U U CA- G G UUUUGG GUCC AG AGUAC AAGUGCUCAUA UGCAG UAG \ UAGG UC UCAUG UUCACGGGUGU AUGUC AUC C GGCGGUUGUUCUCUAAACAA^ U - AUC G - UCAGUA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Cja-Mir-17-P4c_5p |
| mirBase accession | None |
| Sequence |
0- CAAAGUGCUCAUAGUGCAGGUAG -23
Get sequence
|
| Star sequence | Cja-Mir-17-P4c_3p* |
| mirBase accession | None |
| Sequence |
38- ACUGUAGUGUGGGCACUUCUAGU -61
Get sequence
|
