MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-17-P1a  Cja-Mir-17-P1c  Cja-Mir-17-P1d  Cja-Mir-17-P2a  Cja-Mir-17-P2c  Cja-Mir-17-P4a  Cja-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pab-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 125646777-125646837 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGUGGAUAAGAUUGGGUCCUAGUAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUGACUCUACUGUAGUGUGGGCACUUCUAGUACUCUUGGAUAACAAAUCUCUUGUUGGCGG
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Structure
        10           20        30         40        50          
ACAGUGGAUAAGAUUGG---|   U  U     CA-           G     G   UUUUGG 
                    GUCC AG AGUAC   AAGUGCUCAUA UGCAG UAG      \
                    UAGG UC UCAUG   UUCACGGGUGU AUGUC AUC      C
GGCGGUUGUUCUCUAAACAA^   U  -     AUC           G     -   UCAGUA 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Cja-Mir-17-P4c_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Cja-Mir-17-P4c_3p*
mirBase accessionNone
Sequence 
38- ACUGUAGUGUGGGCACUUCUAGU -61
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