MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-20b
Paralogues Dno-Mir-17-P1a  Dno-Mir-17-P1c  Dno-Mir-17-P1d  Dno-Mir-17-P2a  Dno-Mir-17-P2c  Dno-Mir-17-P4a  Dno-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dre-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(dasNov3)
JH573198: 1052698-1052758 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4c)
Mir-17-P1c JH573198: 1052307-1052364 [+] UCSC Ensembl
Mir-17-P2c JH573198: 1052463-1052527 [+] UCSC Ensembl
Mir-17-P4c JH573198: 1052698-1052758 [+] UCSC Ensembl
Mir-19-P2c JH573198: 1052822-1052884 [+] UCSC Ensembl
Mir-92-P1c JH573198: 1052961-1053022 [+] UCSC Ensembl
Mir-92-P2c JH573198: 1053115-1053179 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAAAGGAUGAGAUUGGGUCCUAGUAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUUACUCUACUGUAGUGUGGGCACUUUAAGUACUCUUGGAUUACGUGUCUCUUGCUGGGGG
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Structure
        10           20        30         40        50          
ACAAAGGAUGAGAUUGG---|   U  U     C-            G     G   UUUUGG 
                    GUCC AG AGUAC  AAAGUGCUCAUA UGCAG UAG      \
                    UAGG UC UCAUG  UUUCACGGGUGU AUGUC AUC      C
GGGGGUCGUUCUCUGUGCAU^   U  -     AA            G     -   UCAUUA 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Dno-Mir-17-P4c_5p

mirBase accessionMIMAT0047522
Sequence
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Dno-Mir-17-P4c_3p*

mirBase accessionMIMAT0047523
Sequence
38- ACUGUAGUGUGGGCACUUUAAGU -61
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