Mir-17-P4c

MirGeneDB ID

Dno-Mir-17-P4c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-20b

Paralogues

Dno-Mir-17-P1a Dno-Mir-17-P1c Dno-Mir-17-P1d Dno-Mir-17-P2a Dno-Mir-17-P2c Dno-Mir-17-P4a Dno-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(dasNov3)

JH573198: 1052698-1052758 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-17-P1c JH573198: 1052307-1052364 [+] UCSC Ensembl
Mir-17-P2c JH573198: 1052463-1052527 [+] UCSC Ensembl
Mir-17-P4c JH573198: 1052698-1052758 [+] UCSC Ensembl
Mir-19-P2c JH573198: 1052822-1052884 [+] UCSC Ensembl
Mir-92-P1c JH573198: 1052961-1053022 [+] UCSC Ensembl
Mir-92-P2c JH573198: 1053115-1053179 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAAAGGAUGAGAUUGGGUCCUAGUAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUUACUCUACUGUAGUGUGGGCACUUUAAGUACUCUUGGAUUACGUGUCUCUUGCUGGGGG

Get precursor sequence

Structure

        10           20        30         40        50          
ACAAAGGAUGAGAUUGG---|   U  U     C-            G     G   UUUUGG 
                    GUCC AG AGUAC  AAAGUGCUCAUA UGCAG UAG      \
                    UAGG UC UCAUG  UUUCACGGGUGU AUGUC AUC      C
GGGGGUCGUUCUCUGUGCAU^   U  -     AA            G     -   UCAUUA 
 .       110       100         90        80        70