Mir-17-P4c

MirGeneDB ID

Hsa-Mir-17-P4c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-20b

Paralogues

Hsa-Mir-17-P1a Hsa-Mir-17-P1c Hsa-Mir-17-P1d Hsa-Mir-17-P2a Hsa-Mir-17-P2c Hsa-Mir-17-P4a Hsa-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chrX: 134169812-134169872 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c chrX: 134169382-134169446 [-] UCSC Ensembl
Mir-92-P1c chrX: 134169544-134169604 [-] UCSC Ensembl
Mir-19-P2c chrX: 134169683-134169748 [-] UCSC Ensembl
Mir-17-P4c chrX: 134169812-134169872 [-] UCSC Ensembl
Mir-17-P2c chrX: 134170042-134170106 [-] UCSC Ensembl
Mir-17-P1c chrX: 134170208-134170266 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAGAGGAUAAGAUUGGGUCCUAGUAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUGACUCUACUGUAGUAUGGGCACUUCCAGUACUCUUGGAUAACAAAUCUCUUGUUGAUGG

Get precursor sequence

Structure

        10           20        30         40        50          
ACAGAGGAUAAGAUUGG---|   U  U     CA-           G     G   UUUUGG 
                    GUCC AG AGUAC   AAGUGCUCAUA UGCAG UAG      \
                    UAGG UC UCAUG   UUCACGGGUAU AUGUC AUC      C
GGUAGUUGUUCUCUAAACAA^   U  -     ACC           G     -   UCAGUA 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	3-	3-	3-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	5-	5-	5-	5-	5-	5-	5-	6-	6-	6-	6-	6-

Mature sequence

Hsa-Mir-17-P4c_5p

mirBase accession

MIMAT0001413

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0001413
TargetScanVert: hsa-miR-20b-5p
TargetMiner: hsa-miR-20b-5p
miRDB: MIMAT0001413

Star sequence

Hsa-Mir-17-P4c_3p*

mirBase accession

MIMAT0004752

Sequence

38- ACUGUAGUAUGGGCACUUCCAGU -61

Get sequence

Proposed targets

microrna.org: MIMAT0004752
TargetScanVert: hsa-miR-20b-3p
TargetMiner: hsa-miR-20b-3p
miRDB: MIMAT0004752