Mir-17-P1d

MirGeneDB ID

Hsa-Mir-17-P1d

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-106b

Paralogues

Hsa-Mir-17-P1a Hsa-Mir-17-P1c Hsa-Mir-17-P2a Hsa-Mir-17-P2c Hsa-Mir-17-P4a Hsa-Mir-17-P4c Hsa-Mir-17-P4d

Orthologues

Ami-Mir-17-P1d Bta-Mir-17-P1d Cfa-Mir-17-P1d Cmi-Mir-17-P1d Cpi-Mir-17-P1d Cpo-Mir-17-P1d Dno-Mir-17-P1d Ete-Mir-17-P1d Gmo-Mir-17-P1d Lch-Mir-17-P1d Loc-Mir-17-P1d Mal-Mir-17-P1d Mml-Mir-17-P1d Mmu-Mir-17-P1d Ocu-Mir-17-P1d Rno-Mir-17-P1d Sto-Mir-17-P1d Tni-Mir-17-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr7: 100094002-100094063 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1d)

Mir-92-P2d chr7: 100093571-100093630 [-] UCSC Ensembl
Mir-17-P4d chr7: 100093776-100093837 [-] UCSC Ensembl
Mir-17-P1d chr7: 100094002-100094063 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCCCACCUCCCGCUCCAGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACGCACAGCGUCCGUGGAG

Get precursor sequence

Structure

        10          20        30         40        50          
CCCCACCUCCCGCUCCA--       C     UA-|      G       AGAUAGUGGUCC 
                   GCCCUGC GGGGC   AAGUGCU ACAGUGC            \
                   CGGGACG CCUCG   UUCAUGG UGUCACG            U
GAGGUGCCUGCGACACGCA       A     UCG^      G       CCAUCGUGCCUC 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There are Dicer cuts +1 and +2 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	3-	3-	3-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	5-	5-	5-	5-	5-	5-	5-	6-	6-	6-	6-	6-

Mature sequence

Hsa-Mir-17-P1d_5p

mirBase accession

MIMAT0000680

Sequence

0- UAAAGUGCUGACAGUGCAGAU -21

Get sequence

Proposed targets

microrna.org: MIMAT0000680
TargetScanVert: hsa-miR-106b-5p
TargetMiner: hsa-miR-106b-5p
miRDB: MIMAT0000680

Co-mature sequence

Hsa-Mir-17-P1d_3p

mirBase accession

MIMAT0004672

Sequence

40- CCGCACUGUGGGUACUUGCUGC -62

Get sequence

Proposed targets

microrna.org: MIMAT0004672
TargetScanVert: hsa-miR-106b-3p
TargetMiner: hsa-miR-106b-3p
miRDB: MIMAT0004672