Mir-92-P2d

MirGeneDB ID

Hsa-Mir-92-P2d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-25

Paralogues

Hsa-Mir-92-P1a Hsa-Mir-92-P1c Hsa-Mir-92-P1d Hsa-Mir-92-P2a Hsa-Mir-92-P2c

Orthologues

Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2d Cel-Mir-92 Cfa-Mir-92-P2d Cja-Mir-92-P2d Cmi-Mir-92-P2d Cpo-Mir-92-P2d Dno-Mir-92-P2d Dre-Mir-92-P2d Eca-Mir-92-P2d Esc-Mir-92 Ete-Mir-92-P2d Gmo-Mir-92-P2d Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Laf-Mir-92-P2d Lch-Mir-92-P2d Loc-Mir-92-P2d Mal-Mir-92-P2d Mdo-Mir-92-P2d Mml-Mir-92-P2d Mmr-Mir-92-P2d Mmu-Mir-92-P2d Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P2d Pab-Mir-92-P2d Rno-Mir-92-P2d Sha-Mir-92-P2d Sme-Mir-92 Tni-Mir-92-P2d Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr7: 100093571-100093630 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2d)

Mir-92-P2d chr7: 100093571-100093630 [-] UCSC Ensembl
Mir-17-P4d chr7: 100093776-100093837 [-] UCSC Ensembl
Mir-17-P1d chr7: 100094002-100094063 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCUGAACUCCGGGACUGGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCCCAACACUGCGGAUGCUGGG

Get precursor sequence

Structure

        10          20        30        40         50          
AGCUGAACUCCGGGACU--|   A UG   AG    G     UU  -     U   GGACGC 
                   GGCC G  UUG  AGGC GAGAC  GG GCAAU GCU      \
                   CCGG C  GAC  UCUG CUCUG  UC CGUUA CGG      U
GGGUCGUAGGCGUCACAAC^   C GU   AG    G     U-  A     -   GUCCCG 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-92-P2d_5p*

mirBase accession

MIMAT0004498

Sequence

0- AGGCGGAGACUUGGGCAAUUGCU -23

Get sequence

Proposed targets

microrna.org: MIMAT0004498
TargetScanVert: hsa-miR-25-5p
TargetMiner: hsa-miR-25-5p
miRDB: MIMAT0004498

Mature sequence

Hsa-Mir-92-P2d_3p

mirBase accession

MIMAT0000081

Sequence

38- CAUUGCACUUGUCUCGGUCUGA -60

Get sequence

Proposed targets

microrna.org: MIMAT0000081
TargetScanVert: hsa-miR-25-3p
TargetMiner: hsa-miR-25-3p
miRDB: MIMAT0000081