Mir-92-P2d

MirGeneDB ID

Laf-Mir-92-P2d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Laf-Mir-92-P1a Laf-Mir-92-P1c Laf-Mir-92-P1d Laf-Mir-92-P2a Laf-Mir-92-P2c

Orthologues

Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2d Cel-Mir-92 Cfa-Mir-92-P2d Cja-Mir-92-P2d Cmi-Mir-92-P2d Cpo-Mir-92-P2d Dno-Mir-92-P2d Dre-Mir-92-P2d Eca-Mir-92-P2d Esc-Mir-92 Ete-Mir-92-P2d Gmo-Mir-92-P2d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2d Isc-Mir-92 Lch-Mir-92-P2d Loc-Mir-92-P2d Mal-Mir-92-P2d Mdo-Mir-92-P2d Mml-Mir-92-P2d Mmr-Mir-92-P2d Mmu-Mir-92-P2d Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P2d Pab-Mir-92-P2d Rno-Mir-92-P2d Sha-Mir-92-P2d Sme-Mir-92 Tni-Mir-92-P2d Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010179.1: 713634-713693 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCUGAACACCGGGACUGGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCCCAACACUGCAGAUGUUUGG

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Structure

        10          20        30        40         50          
AGCUGAACACCGGGACU--|   A UG   AG    G     UU  -     U   GGACGC 
                   GGCC G  UUG  AGGC GAGAC  GG GCAAU GCU      \
                   CCGG C  GAC  UCUG CUCUG  UC CGUUA CGG      U
GGUUUGUAGACGUCACAAC^   C GU   AG    G     U-  A     -   GUCCCG 
.       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Wh

Star sequence

Laf-Mir-92-P2d_5p*

mirBase accession

None

Sequence

0- AGGCGGAGACUUGGGCAAUUGCU -23

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Mature sequence

Laf-Mir-92-P2d_3p

mirBase accession

None

Sequence

38- CAUUGCACUUGUCUCGGUCUGA -60

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