MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-92-P2d4

Family name MIR-92 (all species)
Seed AUUGCAC
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-25
Paralogues Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xla-Mir-92-P2a  Xla-Mir-92-P2c3  Xla-Mir-92-P2c4  Xla-Mir-92-P2d3 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2d  Cel-Mir-92  Cfa-Mir-92-P2d  Cja-Mir-92-P2d  Cmi-Mir-92-P2d  Cpo-Mir-92-P2d  Dno-Mir-92-P2d  Dre-Mir-92-P2d  Eca-Mir-92-P2d  Esc-Mir-92  Ete-Mir-92-P2d  Gmo-Mir-92-P2d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2d  Isc-Mir-92  Laf-Mir-92-P2d  Lch-Mir-92-P2d  Loc-Mir-92-P2d  Mal-Mir-92-P2d  Mdo-Mir-92-P2d  Mml-Mir-92-P2d  Mmr-Mir-92-P2d  Mmu-Mir-92-P2d  Oan-Mir-92-P2d  Obi-Mir-92  Ocu-Mir-92-P2d  Pab-Mir-92-P2d  Rno-Mir-92-P2d  Sha-Mir-92-P2d  Sme-Mir-92  Tni-Mir-92-P2d  Xtr-Mir-92-P2d 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NW_016694811.1: 3964235-3964292 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCAGGAUCCAAAACAGCUGCUGUUGACAGGCAGAGACAGGAGCAAUUGCUGGUGUACCUUGGGAGCAUUGCACUUGUCUCGGUCUGACAGUGUCUGCAAACCCCUCCGACAUCUCA
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Structure
        10             20        30        40        50         
UUUCAGGAUCCAAAACA--  ---|     UGA     A        A     U  UGGUGUA 
                   GC   UGCUGU   CAGGC GAGACAGG GCAAU GC       \
                   CG   GUGACA   GUCUG CUCUGUUC CGUUA CG       C
ACUCUACAGCCUCCCCAAA  UCU^     ---     G        A     -  AGGGUUC 
      110       100        90           80        70         60
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em
Star sequence

Xla-Mir-92-P2d4_5p* (predicted)
mirBase accessionMIMAT0046553
Sequence 
0- GGCAGAGACAGGAGCAAUUGC -21
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Mature sequence

Xla-Mir-92-P2d4_3p
mirBase accessionMIMAT0046554
Sequence 
37- CAUUGCACUUGUCUCGGUCUG -58
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