MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-92-P2d3

Family name MIR-92 (all species)
Seed AUUGCAC
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xla-Mir-92-P2a  Xla-Mir-92-P2c3  Xla-Mir-92-P2c4  Xla-Mir-92-P2d4 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2d  Cel-Mir-92  Cfa-Mir-92-P2d  Cja-Mir-92-P2d  Cmi-Mir-92-P2d  Cpo-Mir-92-P2d  Dno-Mir-92-P2d  Dre-Mir-92-P2d  Eca-Mir-92-P2d  Esc-Mir-92  Ete-Mir-92-P2d  Gmo-Mir-92-P2d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2d  Isc-Mir-92  Laf-Mir-92-P2d  Lch-Mir-92-P2d  Loc-Mir-92-P2d  Mal-Mir-92-P2d  Mdo-Mir-92-P2d  Mml-Mir-92-P2d  Mmr-Mir-92-P2d  Mmu-Mir-92-P2d  Oan-Mir-92-P2d  Obi-Mir-92  Ocu-Mir-92-P2d  Pab-Mir-92-P2d  Rno-Mir-92-P2d  Sha-Mir-92-P2d  Sme-Mir-92  Tni-Mir-92-P2d  Xtr-Mir-92-P2d 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030728.1: 136153764-136153821 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCAGGUUCCAAAACAGCUGGUGUUGACAGGCAGAGACAGGAGCAACUGCUGGUGUGCCUUGGGAGCAUUGCACUUGUCUCGGUCUGACAGUGUCAACAAAACCCUCCAAUCUCUUU
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Structure
        10          20        30        40        50         
UUUCAGGUUCCAAAACAGC--|  UG   A     A        A    C   UGGUGUG 
                     UGG  UUG CAGGC GAGACAGG GCAA UGC       \
                     ACU  GAC GUCUG CUCUGUUC CGUU ACG       C
UUUCUCUAACCUCCCAAAACA^  GU   A     G        A    -   AGGGUUC 
      110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em
Star sequence

Xla-Mir-92-P2d3_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGCAGAGACAGGAGCAACUGC -21
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Mature sequence

Xla-Mir-92-P2d3_3p
mirBase accessionNone
Sequence 
37- CAUUGCACUUGUCUCGGUCUG -58
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