Mir-92-P2d

MirGeneDB ID

Eca-Mir-92-P2d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-25

Paralogues

Eca-Mir-92-P1a Eca-Mir-92-P1c Eca-Mir-92-P1d Eca-Mir-92-P2a Eca-Mir-92-P2c

Orthologues

Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2d Cel-Mir-92 Cfa-Mir-92-P2d Cja-Mir-92-P2d Cmi-Mir-92-P2d Cpo-Mir-92-P2d Dno-Mir-92-P2d Dre-Mir-92-P2d Esc-Mir-92 Ete-Mir-92-P2d Gmo-Mir-92-P2d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2d Isc-Mir-92 Laf-Mir-92-P2d Lch-Mir-92-P2d Loc-Mir-92-P2d Mal-Mir-92-P2d Mdo-Mir-92-P2d Mml-Mir-92-P2d Mmr-Mir-92-P2d Mmu-Mir-92-P2d Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P2d Pab-Mir-92-P2d Rno-Mir-92-P2d Sha-Mir-92-P2d Sme-Mir-92 Tni-Mir-92-P2d Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009160.1: 8114925-8114984 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2d)

Mir-92-P2d CM009160.1: 8114925-8114984 [-] UCSC Ensembl
Mir-17-P4d CM009160.1: 8115130-8115191 [-] UCSC Ensembl
Mir-17-P1d CM009160.1: 8115356-8115417 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCUGAACACCGGGACUGGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCCCCACACGGCGGAUGUUUGG

Get precursor sequence

Structure

        10          20        30        40         50          
AGCUGAACACCGGGACU--|   A UG   AG    G     UU  -     U   GGACGC 
                   GGCC G  UUG  AGGC GAGAC  GG GCAAU GCU      \
                   CCGG C  GAC  UCUG CUCUG  UC CGUUA CGG      U
GGUUUGUAGGCGGCACACC^   C GU   AG    G     U-  A     -   GUCCCG 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-92-P2d_5p*

mirBase accession

None

Sequence

0- AGGCGGAGACUUGGGCAAUUGCU -23

Get sequence

Mature sequence

Eca-Mir-92-P2d_3p

mirBase accession

MIMAT0013057

Sequence

38- CAUUGCACUUGUCUCGGUCUGA -60

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