Mir-92-P2d

MirGeneDB ID

Eca-Mir-92-P2d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-25

Paralogues

Eca-Mir-92-P1a Eca-Mir-92-P1c Eca-Mir-92-P1d Eca-Mir-92-P2a Eca-Mir-92-P2c

Orthologues

Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2d Cel-Mir-92 Cfa-Mir-92-P2d Cja-Mir-92-P2d Cmi-Mir-92-P2d Cpo-Mir-92-P2d Dno-Mir-92-P2d Dre-Mir-92-P2d Esc-Mir-92 Ete-Mir-92-P2d Gmo-Mir-92-P2d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2d Isc-Mir-92 Laf-Mir-92-P2d Lch-Mir-92-P2d Loc-Mir-92-P2d Mal-Mir-92-P2d Mdo-Mir-92-P2d Mml-Mir-92-P2d Mmr-Mir-92-P2d Mmu-Mir-92-P2d Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P2d Pab-Mir-92-P2d Rno-Mir-92-P2d Sha-Mir-92-P2d Sme-Mir-92 Tni-Mir-92-P2d Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009160.1: 8114925-8114984 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2d)

Mir-92-P2d CM009160.1: 8114925-8114984 [-] UCSC Ensembl
Mir-17-P4d CM009160.1: 8115130-8115191 [-] UCSC Ensembl
Mir-17-P1d CM009160.1: 8115356-8115417 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCUGAACACCGGGACUGGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCCCCACACGGCGGAUGUUUGG

Get precursor sequence

Structure

        10          20        30        40         50          
AGCUGAACACCGGGACU--|   A UG   AG    G     UU  -     U   GGACGC 
                   GGCC G  UUG  AGGC GAGAC  GG GCAAU GCU      \
                   CCGG C  GAC  UCUG CUCUG  UC CGUUA CGG      U
GGUUUGUAGGCGGCACACC^   C GU   AG    G     U-  A     -   GUCCCG 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-92-P2d_5p*

mirBase accession

None

Sequence

0- AGGCGGAGACUUGGGCAAUUGCU -23

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Mature sequence

Eca-Mir-92-P2d_3p

mirBase accession

MIMAT0013057

Sequence

38- CAUUGCACUUGUCUCGGUCUGA -60

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