MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-92-P2d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-25
Paralogues Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Gmo-Mir-92-P2c 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2d  Cel-Mir-92  Cfa-Mir-92-P2d  Cja-Mir-92-P2d  Cmi-Mir-92-P2d  Cpo-Mir-92-P2d  Dno-Mir-92-P2d  Dre-Mir-92-P2d  Eca-Mir-92-P2d  Esc-Mir-92  Ete-Mir-92-P2d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2d  Isc-Mir-92  Laf-Mir-92-P2d  Lch-Mir-92-P2d  Loc-Mir-92-P2d  Mal-Mir-92-P2d  Mdo-Mir-92-P2d  Mml-Mir-92-P2d  Mmr-Mir-92-P2d  Mmu-Mir-92-P2d  Oan-Mir-92-P2d  Obi-Mir-92  Ocu-Mir-92-P2d  Pab-Mir-92-P2d  Rno-Mir-92-P2d  Sha-Mir-92-P2d  Sme-Mir-92  Tni-Mir-92-P2d  Xla-Mir-92-P2d3  Xla-Mir-92-P2d4  Xtr-Mir-92-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_3767: 173042-173101 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2d)
Mir-92-P2d GeneScaffold_3767: 173042-173101 [-] UCSC Ensembl
Mir-19-P2d GeneScaffold_3767: 173195-173260 [-] UCSC Ensembl
Mir-17-P4d GeneScaffold_3767: 173469-173529 [-] UCSC Ensembl
Mir-17-P1d GeneScaffold_3767: 173694-173755 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAACCUCUGAGAGACUUGCCGGUGUUGAGAGGCGGAGACUCGGGCAAUUGCCAGCCUUCCCAGACGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCACAGCGCAUCCUGCCCCCCC
Get precursor sequence
Structure
        10          20        30        40        50          
UGAACCUCUGAGAGACU--|     UG   AG    G     UCGG     U   AGCCUU 
                   UGCCGG  UUG  AGGC GAGAC    GCAAU GCC      \
                   ACGGCC  GAC  UCUG CUCUG    CGUUA CGG      C
CCCCCCCGUCCUACGCGAC^     GU   AG    G     UUCA     -   CAGACC 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-92-P2d_5p*

mirBase accessionMIMAT0044239
Sequence
0- AGGCGGAGACUCGGGCAAUUGCC -23
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Mature sequence

Gmo-Mir-92-P2d_3p

mirBase accessionMIMAT0044240
Sequence
38- CAUUGCACUUGUCUCGGUCUGA -60
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