MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-92-P2c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-363
Paralogues Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Gmo-Mir-92-P2d 
Orthologues Aca-Mir-92-P2c  Ami-Mir-92-P2c  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2c  Cel-Mir-92  Cfa-Mir-92-P2c  Cli-Mir-92-P2c  Cmi-Mir-92-P2c  Cpi-Mir-92-P2c  Cpo-Mir-92-P2c  Dno-Mir-92-P2c  Dre-Mir-92-P2c  Esc-Mir-92  Ete-Mir-92-P2c  Gga-Mir-92-P2c  Gja-Mir-92-P2c  Hsa-Mir-92-P2c  Isc-Mir-92  Lch-Mir-92-P2c  Loc-Mir-92-P2c  Mdo-Mir-92-P2c  Mml-Mir-92-P2c  Mmu-Mir-92-P2c  Mun-Mir-92-P2c  Oan-Mir-92-P2c  Obi-Mir-92  Ocu-Mir-92-P2c  Pbv-Mir-92-P2c  Rno-Mir-92-P2c  Sha-Mir-92-P2c  Sme-Mir-92  Spt-Mir-92-P2c  Sto-Mir-92-P2c  Tgu-Mir-92-P2c  Xla-Mir-92-P2c3  Xla-Mir-92-P2c4  Xtr-Mir-92-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
scaffold08698: 71694-71762 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2c)
Mir-92-P2c scaffold08698: 71694-71762 [-] UCSC Ensembl
Mir-17-P4c scaffold08698: 72088-72146 [-] UCSC Ensembl
Mir-17-P2c scaffold08698: 72457-72520 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAUAUACGGCUGUUUGUCUGGCUGUUUUCGGGUGGAUGACUUCGCAAUUUUAAUUCCAUUUAAGAUCUGACUGAAAAUUGCACAGUAUCCAUCUGUAAUCCGCCAGAUCUAGCGAACAGCUUGCUUU
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Structure
        10          20        30         40        50        60    
UUGAUAUACGGCUGUUU--|      U UU  -          A  UC        AAUUCCAUUU 
                   GUCUGGC G  UU CGGGUGGAUG CU  GCAAUUUU          A
                   UAGACCG C  AA GUCUACCUAU GA  CGUUAAAA          A
UUUCGUUCGACAAGCGAUC^      - CU  U          -  CA        GUCAGUCUAG 
       120       110        100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-92-P2c_5p* (predicted)

mirBase accessionNone
Sequence
0- CGGGUGGAUGACUUCGCAAUUUU -23
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Mature sequence

Gmo-Mir-92-P2c_3p

mirBase accessionMIMAT0044340
Sequence
47- AAUUGCACAGUAUCCAUCUGUA -69
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