Mir-92-P2c

MirGeneDB ID

Sto-Mir-92-P2c

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-92-P1a Sto-Mir-92-P1b Sto-Mir-92-P1c Sto-Mir-92-P1d Sto-Mir-92-P2a Sto-Mir-92-P2b

Orthologues

Aca-Mir-92-P2c Ami-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2c Cel-Mir-92 Cfa-Mir-92-P2c Cja-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Cpo-Mir-92-P2c Dno-Mir-92-P2c Dre-Mir-92-P2c Eca-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2c Isc-Mir-92 Laf-Mir-92-P2c Lch-Mir-92-P2c Loc-Mir-92-P2c Mdo-Mir-92-P2c Mml-Mir-92-P2c Mmr-Mir-92-P2c Mmu-Mir-92-P2c Mun-Mir-92-P2c Neu-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pab-Mir-92-P2c Pbv-Mir-92-P2c Rno-Mir-92-P2c Sha-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Tgu-Mir-92-P2c Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xtr-Mir-92-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_003427355_STO_add)

BFAA01013767.1: 5411-5474 [+]

Precursor
(pre-Mir +30nt flank)

GCAUCUUGUCUUUUGUUGUCUUGCUGUUGUCAGGUGGAUCACUCUGCAAUUUUGAGCAAUUUUCUUUUGUAAAAUUGCACGGUAUCCAUCUGUAAUCCGCAAGACAUUUUGCAUGUUAGAGCUA

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Structure

        10          20         30        40        50        60  
GCAUCUUGUCUUUUGUU--       U-|   U         C   C         GAGCAAUU 
                   GUCUUGC  GUUG CAGGUGGAU ACU UGCAAUUUU        \
                   CAGAACG  UAAU GUCUACCUA UGG ACGUUAAAA        U
AUCGAGAUUGUACGUUUUA       CC^   -         -   C         UGUUUUCU 
  120       110       100         90         80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

To

Star sequence

Sto-Mir-92-P2c_5p*

mirBase accession

None

Sequence

0- CAGGUGGAUCACUCUGCAAUUUU -23

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Mature sequence

Sto-Mir-92-P2c_3p

mirBase accession

None

Sequence

42- AAUUGCACGGUAUCCAUCUGUA -64

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