Mir-92-P2c

MirGeneDB ID

Dre-Mir-92-P2c

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-363

Paralogues

Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Dre-Mir-92-P1d Dre-Mir-92-P2d

Orthologues

Aca-Mir-92-P2c Ami-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2c Cel-Mir-92 Cfa-Mir-92-P2c Cja-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Cpo-Mir-92-P2c Dno-Mir-92-P2c Eca-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2c Isc-Mir-92 Laf-Mir-92-P2c Lch-Mir-92-P2c Loc-Mir-92-P2c Mdo-Mir-92-P2c Mml-Mir-92-P2c Mmr-Mir-92-P2c Mmu-Mir-92-P2c Mun-Mir-92-P2c Neu-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pab-Mir-92-P2c Pbv-Mir-92-P2c Rno-Mir-92-P2c Sha-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Sto-Mir-92-P2c Tgu-Mir-92-P2c Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xtr-Mir-92-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr14: 31466699-31466769 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2c)

Mir-92-P2c chr14: 31466699-31466769 [-] UCSC Ensembl
Mir-19-P2c chr14: 31467045-31467105 [-] UCSC Ensembl
Mir-17-P4c chr14: 31467183-31467241 [-] UCSC Ensembl
Mir-17-P2c chr14: 31467386-31467450 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUAAAUGCAAAUAUUUGUCUUGCUGUUUUCGGGUGGAUGACUCUGCAAUUUUAUUAGUGAUGGAAAAACUUCAAUAAAAAUUGCACGGUAUCCAUCUGUAAUCCGCUGGAUUCCAUUACCUGCGUUUGUU

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Structure

        10          20        30         40        50        60     
UUUAAAUGCAAAUAUUU--|   U  U UU  -          A  C         AUUAGUGAUGG 
                   GUCU GC G  UU CGGGUGGAUG CU UGCAAUUUU           A
                   UAGG CG C  AA GUCUACCUAU GG ACGUUAAAA           A
UUGUUUGCGUCCAUUACCU^   U  - CU  U          -  C         AUAACUUCAAA 
 .       120       110        100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-92-P2c_5p*

mirBase accession

MIMAT0031992

Sequence

0- CGGGUGGAUGACUCUGCAAUUUU -23

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Mature sequence

Dre-Mir-92-P2c_3p

mirBase accession

MIMAT0001874

Sequence

49- AAUUGCACGGUAUCCAUCUGUA -71

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Proposed targets

TargetScanFish: dre-miR-363