Mir-92-P2c

MirGeneDB ID

Cpo-Mir-92-P2c

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-363

Paralogues

Cpo-Mir-92-P1a Cpo-Mir-92-P1c Cpo-Mir-92-P1d Cpo-Mir-92-P2a Cpo-Mir-92-P2d

Orthologues

Aca-Mir-92-P2c Ami-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2c Cel-Mir-92 Cfa-Mir-92-P2c Cja-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Dno-Mir-92-P2c Dre-Mir-92-P2c Eca-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2c Isc-Mir-92 Laf-Mir-92-P2c Lch-Mir-92-P2c Loc-Mir-92-P2c Mdo-Mir-92-P2c Mml-Mir-92-P2c Mmr-Mir-92-P2c Mmu-Mir-92-P2c Mun-Mir-92-P2c Neu-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pab-Mir-92-P2c Pbv-Mir-92-P2c Rno-Mir-92-P2c Sha-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Sto-Mir-92-P2c Tgu-Mir-92-P2c Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xtr-Mir-92-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(cavPor3)

scaffold_128: 2512251-2512315 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-92-P2c)

Mir-92-P2c scaffold_128: 2512251-2512315 [-] UCSC
Mir-92-P1c scaffold_128: 2512411-2512471 [-] UCSC
Mir-19-P2c scaffold_128: 2512548-2512615 [-] UCSC
Mir-17-P4c scaffold_128: 2512679-2512739 [-] UCSC
Mir-17-P2c scaffold_128: 2512897-2512961 [-] UCSC
Mir-17-P1c scaffold_128: 2513060-2513118 [-] UCSC

Precursor
(pre-Mir +30nt flank)

GAAUUAUAAAAUGAUCUGUUUUGCUGUUGUCGGGUGGAUCACGAUGCAAUUUUGAUUAGACUAAUAGGAGAAAAAUUGCACGGUAUCCAUCUGUAAACCGCAGGACUUUGGUUGGCCACAUUCUU

Get precursor sequence

Structure

        10          20        30        40        50        60  
GAAUUAUAAAAUGAUCU--|      U   GU         CA  A         GAUUAGAC 
                   GUUUUGC GUU  CGGGUGGAU  CG UGCAAUUUU        U
                   CAGGACG CAA  GUCUACCUA  GC ACGUUAAAA        A
UUCUUACACCGGUUGGUUU^      C   AU         UG  -         AGAGGAUA 
   120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-92-P2c_5p* (predicted)

mirBase accession

MIMAT0047192

Sequence

0- CGGGUGGAUCACGAUGCAAUUUU -23

Get sequence

Mature sequence

Cpo-Mir-92-P2c_3p

mirBase accession

MIMAT0047193

Sequence

43- AAUUGCACGGUAUCCAUCUGUA -65

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