Mir-92-P2c

MirGeneDB ID

Bta-Mir-92-P2c

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-363

Paralogues

Bta-Mir-92-P1a Bta-Mir-92-P1c Bta-Mir-92-P1d Bta-Mir-92-P2a Bta-Mir-92-P2d

Orthologues

Aca-Mir-92-P2c Ami-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Cel-Mir-92 Cfa-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Cpo-Mir-92-P2c Dno-Mir-92-P2c Dre-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Hsa-Mir-92-P2c Isc-Mir-92 Lch-Mir-92-P2c Loc-Mir-92-P2c Mdo-Mir-92-P2c Mml-Mir-92-P2c Mmu-Mir-92-P2c Mun-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pbv-Mir-92-P2c Rno-Mir-92-P2c Sha-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Sto-Mir-92-P2c Tgu-Mir-92-P2c Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xtr-Mir-92-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 17975507-17975571 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2c)

Mir-92-P2c NC_037357.1: 17975507-17975571 [-] UCSC Ensembl
Mir-92-P1c NC_037357.1: 17975665-17975725 [-] UCSC Ensembl
Mir-19-P2c NC_037357.1: 17975815-17975876 [-] UCSC Ensembl
Mir-17-P4c NC_037357.1: 17975938-17975998 [-] UCSC Ensembl
Mir-17-P2c NC_037357.1: 17976173-17976237 [-] UCSC Ensembl
Mir-17-P1c NC_037357.1: 17976339-17976397 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAUUGUAAAAUGACCUGUUUUGCUGUUGUCGGGUGGAUCACGAUGCAAUUUUGAUUAGUAUAAUAGGAGAAAAAUUGCACGGUAUCCAUCUGCGAACCGCAGGACCCUUGUUGACAACAGUCUG

Get precursor sequence

Structure

        10          20        30        40        50        60  
UCAUUGUAAAAUGACCU--|      U   GU         CA  A         GAUUAGUA 
                   GUUUUGC GUU  CGGGUGGAU  CG UGCAAUUUU        U
                   CAGGACG CAA  GUCUACCUA  GC ACGUUAAAA        A
GUCUGACAACAGUUGUUCC^      C   GC         UG  -         AGAGGAUA 
   120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-92-P2c_5p*

mirBase accession

None

Sequence

0- CGGGUGGAUCACGAUGCAAUUUU -23

Get sequence

Mature sequence

Bta-Mir-92-P2c_3p

mirBase accession

MIMAT0003855

Sequence

43- AAUUGCACGGUAUCCAUCUGCG -65

Get sequence

Proposed targets

TargetScanVert: bta-miR-363