MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Cow (Bos taurus)
MiRBase ID bta-mir-92a-2
Paralogues Bta-Mir-92-P1a  Bta-Mir-92-P1d  Bta-Mir-92-P2a  Bta-Mir-92-P2c  Bta-Mir-92-P2d 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Cel-Mir-92  Cfa-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Hsa-Mir-92-P1c  Isc-Mir-92  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037357.1: 17975665-17975725 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1c)
Mir-92-P2c NC_037357.1: 17975507-17975571 [-] UCSC Ensembl
Mir-92-P1c NC_037357.1: 17975665-17975725 [-] UCSC Ensembl
Mir-19-P2c NC_037357.1: 17975815-17975876 [-] UCSC Ensembl
Mir-17-P4c NC_037357.1: 17975938-17975998 [-] UCSC Ensembl
Mir-17-P2c NC_037357.1: 17976173-17976237 [-] UCSC Ensembl
Mir-17-P1c NC_037357.1: 17976339-17976397 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUCUCCAGUCUUCGCACCCAUUCAUUCAUGGGUGGGGAUUUGUUGCACUGCUUGUGUUAUAUAUAAAGUAUUGCACUUGUCCCGGCCUGUGGAAGAAAUGAGGAAUUUAUCAUCUUCUUU
Get precursor sequence
Structure
        10         20         30        40        50        60
AAUCUCCAGUCUUCGCACC-  -|  A         G     UU  U   C    UGUGUU 
                    CA UUC UUCAUGGGU GGGAU  GU GCA UGCU      A
                    GU AAG AGGUGUCCG CCCUG  CA CGU AUGA      U
UUUCUUCUACUAUUUAAGGA  A^  A         G     UU  -   U    AAUAUA 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Star sequence

Bta-Mir-92-P1c_5p*

mirBase accessionNone
Sequence
0- GGGUGGGGAUUUGUUGCACUGCU -23
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Mature sequence

Bta-Mir-92-P1c_3p

mirBase accessionMIMAT0009383
Sequence
39- UAUUGCACUUGUCCCGGCCUGU -61
Get sequence
Proposed targets TargetScanVert: bta-miR-92a