MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-92-P1a  Cja-Mir-92-P1d  Cja-Mir-92-P2a  Cja-Mir-92-P2c  Cja-Mir-92-P2d 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Eca-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1c  Isc-Mir-92  Laf-Mir-92-P1c  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmr-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Neu-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pab-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 125646508-125646568 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCUCCAGCACUCGUGCUCAUUCAUCCCUGGGUGGGGAUUUGUUGCAUUACUUGUGUUCUAUAUAAAGUAUUGCACUUGUCCCGGCCUGUGGAAGAAAGGAGGAUUUUAUCAUCUUCUUA
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Structure
        10         20         30        40        50        60
CAUCUCCAGCACUCGUG-   A-|  A   C     G     UU  U   U    UGUGUU 
                  CUC  UUC UCC UGGGU GGGAU  GU GCA UACU      C
                  GAG  AAG AGG GUCCG CCCUG  CA CGU AUGA      U
AUUCUUCUACUAUUUUAG   GA^  A   U     G     UU  -   U    AAUAUA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Cja-Mir-92-P1c_5p*
mirBase accessionNone
Sequence 
0- GGGUGGGGAUUUGUUGCAUUACU -23
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Mature sequence

Cja-Mir-92-P1c_3p
mirBase accessionNone
Sequence 
39- UAUUGCACUUGUCCCGGCCUGU -61
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