MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-92-2
Paralogues Gga-Mir-92-P1a  Gga-Mir-92-P2a  Gga-Mir-92-P2c 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gja-Mir-92-P1c  Hsa-Mir-92-P1c  Isc-Mir-92  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)
4: 3967357-3967418 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1c)
Mir-92-P2c 4: 3967217-3967281 [-] UCSC Ensembl
Mir-92-P1c 4: 3967357-3967418 [-] UCSC Ensembl
Mir-19-P2c 4: 3967505-3967564 [-] UCSC Ensembl
Mir-17-P4c 4: 3967641-3967701 [-] UCSC Ensembl
Mir-17-P2c 4: 3967813-3967877 [-] UCSC Ensembl
Mir-17-P1c 4: 3967949-3968006 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCGAAGAUGCCUUGCGCUGGUUCCUCCGUGGGUGGGGAUUUGUUGCAUUACUUGUAGCUGUGUGUAGAGUAUUGCACUUGUCCCGGCCUGUGGAGGAAAGGAGGACUGGUCUUCAGGCUGC
Get precursor sequence
Structure
        10           20        30        40        50        60 
UCCGAAGAUGCCUUGCG---| GG        UG   G     UU  U   U    UGUAGCU 
                    CU  UUCCUCCG  GGU GGGAU  GU GCA UACU       \
                    GG  AAGGAGGU  CCG CCCUG  CA CGU AUGA       G
CGUCGGACUUCUGGUCAGGA^ A-        GU   G     UU  -   U    GAUGUGU 
120       110       100         90        80         70
Deep sequencing
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CommentThere is a second Drosha cut on the 5p arm +2 relative as well as a second Dicer cut +1 on the 5p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-92-P1c_5p*

mirBase accessionNone
Sequence
0- GGGUGGGGAUUUGUUGCAUUACU -23
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Mature sequence

Gga-Mir-92-P1c_3p

mirBase accessionMIMAT0001109
Sequence
40- UAUUGCACUUGUCCCGGCCUGU -62
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