MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-92-P2a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-367
Paralogues Gga-Mir-92-P1a  Gga-Mir-92-P1c  Gga-Mir-92-P2c 
Orthologues Aca-Mir-92-P2a  Ami-Mir-92-P2a  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2a  Cel-Mir-92  Cfa-Mir-92-P2a  Cja-Mir-92-P2a  Cli-Mir-92-P2a  Cmi-Mir-92-P2a  Cpi-Mir-92-P2a  Cpo-Mir-92-P2a  Dno-Mir-92-P2a  Eca-Mir-92-P2a  Esc-Mir-92  Ete-Mir-92-P2a  Gja-Mir-92-P2a  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2a  Isc-Mir-92  Laf-Mir-92-P2a  Mdo-Mir-92-P2a  Mml-Mir-92-P2a  Mmr-Mir-92-P2a  Mmu-Mir-92-P2a  Mun-Mir-92-P2a  Neu-Mir-92-P2a  Oan-Mir-92-P2a  Obi-Mir-92  Ocu-Mir-92-P2a  Pab-Mir-92-P2a  Rno-Mir-92-P2a  Sha-Mir-92-P2a  Sme-Mir-92  Spt-Mir-92-P2a  Sto-Mir-92-P2a  Tgu-Mir-92-P2a  Xla-Mir-92-P2a  Xtr-Mir-92-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)
4: 57085223-57085282 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2a)
Mir-430-P1 4: 57084186-57084246 [+] UCSC Ensembl
Mir-430-P2 4: 57084446-57084502 [+] UCSC Ensembl
Mir-430-P3 4: 57084749-57084807 [+] UCSC Ensembl
Mir-430-P4 4: 57085084-57085144 [+] UCSC Ensembl
Mir-92-P2a 4: 57085223-57085282 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUUUUCAUCCUUCUCGGCUACAGGCUAAUACUGUUGCUAACAUGCAACUCUGUUGUAUAAAAAUUGGAAUUGCACUUUAGCAAUGGUGAUGGACUGUAAGACAUGCACACCGAGUUGCA
Get precursor sequence
Structure
        10          20        30        40        50         
GGUUUUCAUCCUUCUCGGC--|    G   A            CA     C   GUUGUA 
                     UACAG CUA UACUGUUGCUAA  UGCAA UCU      U
                     AUGUC GGU GUGGUAACGAUU  ACGUU AGG      A
ACGUUGAGCCACACGUACAGA^    A   A            UC     A   UUAAAA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-92-P2a_5p*

mirBase accessionNone
Sequence
0- ACUGUUGCUAACAUGCAACUCU -22
Get sequence
Mature sequence

Gga-Mir-92-P2a_3p

mirBase accessionMIMAT0003369
Sequence
38- AAUUGCACUUUAGCAAUGGUGA -60
Get sequence
Proposed targets TargetScanVert: gga-miR-367
miRDB: MIMAT0003369