MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-92-P2a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID
Paralogues Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Oan-Mir-92-P1c  Oan-Mir-92-P1d  Oan-Mir-92-P2c  Oan-Mir-92-P2d 
Orthologues Aca-Mir-92-P2a  Ami-Mir-92-P2a  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2a  Cel-Mir-92  Cfa-Mir-92-P2a  Cja-Mir-92-P2a  Cli-Mir-92-P2a  Cmi-Mir-92-P2a  Cpi-Mir-92-P2a  Cpo-Mir-92-P2a  Dno-Mir-92-P2a  Eca-Mir-92-P2a  Esc-Mir-92  Ete-Mir-92-P2a  Gga-Mir-92-P2a  Gja-Mir-92-P2a  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2a  Isc-Mir-92  Laf-Mir-92-P2a  Mdo-Mir-92-P2a  Mml-Mir-92-P2a  Mmr-Mir-92-P2a  Mmu-Mir-92-P2a  Mun-Mir-92-P2a  Neu-Mir-92-P2a  Obi-Mir-92  Ocu-Mir-92-P2a  Pab-Mir-92-P2a  Rno-Mir-92-P2a  Sha-Mir-92-P2a  Sme-Mir-92  Spt-Mir-92-P2a  Sto-Mir-92-P2a  Tgu-Mir-92-P2a  Xla-Mir-92-P2a  Xtr-Mir-92-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041739.1: 34493535-34493594 [+]
Clustered miRNAs
(< 50kb from Mir-92-P2a)
Mir-430-P1 NC_041739.1: 34492840-34492898 [+]
Mir-430-P3 NC_041739.1: 34493236-34493293 [+]
Precursor
(pre-Mir +30nt flank)
AGAUAUAUUAUAUAUUAGCUGCAGGCCAUUACUGUUGCUAACAUGCAACUCUGUUAUGUAUAAACUGGAAUUGCACUUUAGCAAUGGUGAUGGACUGUAAGUCAAUUUUUAAGAUUGCUA
Get precursor sequence
Structure
        10          20        30        40        50         
AGAUAUAUUAUAUAUUA-  -|    G                CA     C   GUUAUG 
                  GC UGCAG CCAUUACUGUUGCUAA  UGCAA UCU      U
                  UG AUGUC GGUAGUGGUAACGAUU  ACGUU AGG      A
AUCGUUAGAAUUUUUAAC  A^    A                UC     A   UCAAAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-92-P2a_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUGUUGCUAACAUGCAACUCU -22
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Mature sequence

Oan-Mir-92-P2a_3p

mirBase accessionNone
Sequence
38- AAUUGCACUUUAGCAAUGGUGA -60
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